Wednesday 17 January 2018 (1st Week, Hilary Term)

• 11:00 - Just Development and Governance of Artificial Intelligence
  Bendert Zevenbergen (Princeton University)

Tuesday 19 May 2020 (4th Week, Trinity Term)

• 11:00 - Machine Learning in Python with scikit-learn
  TBA

Wednesday 3 June 2020 (6th Week, Trinity Term)

• 11:00 - Introduction to FUNPACK
  Joining instructions will be sent by Sarah Laseke
  TBA

Wednesday 10 June 2020 (7th Week, Trinity Term)

• 11:00 - BDI R Code Clinic - Handling data frames the data.table way
  TBA

Wednesday 1 July 2020 (10th Week, Trinity Term)

• 11:00 - BDI R Code Clinic - Intuitive interactive data exploration with iSEE
  TBA

Tuesday 28 July 2020 (14th Week, Trinity Term)

• 11:00 - BDI Python Code Clinic - More Machine Learning in Python with scikit-learn
  TBA

Wednesday 28 October 2020 (3rd Week, Michaelmas Term)

• 11:00 - BDI Code Clinic - Snakemake
  Dr Srinivasa Rao Rao (University of Oxford)

Thursday 5 November 2020 (4th Week, Michaelmas Term)

• 11:00 - Coding Community Slack Channel
  TBA

Tuesday 10 November 2020 (5th Week, Michaelmas Term)

• 11:00 - An introduction to the R ggplot2 package
  Dr Jason Torres (University of Oxford)

Wednesday 11 November 2020 (5th Week, Michaelmas Term)

• 14:00 - Core Skills for the BMRC Cluster
  TBA

Wednesday 18 November 2020 (6th Week, Michaelmas Term)

• 11:00 - Advanced workflow management with Snakemake
  TBA

Tuesday 24 November 2020 (7th Week, Michaelmas Term)

• 10:00 - Continuous Integration for Automating Software Testing, 24 November, 10am - 1pm
  TBA

Wednesday 25 November 2020 (7th Week, Michaelmas Term)

• 11:00 - Extracting Variables from the UK Biobank
  TBA
• 15:00 - Big Data Ethics Forum: Discussing the ethical considerations around public, policy and research partner engagement in the formation of global pathogen molecular surveillance systems
  Dr George Busby (Nuffield Department of Medicine)

Tuesday 1 December 2020 (8th Week, Michaelmas Term)

• 11:30 - Reproducible Analysis using R
  Dr Christiana Kartsonaki (Nuffield Department of Population Health, University of Oxford)

Wednesday 2 December 2020 (8th Week, Michaelmas Term)

• 11:00 - Computational Notebooks for Biomedical Research
  TBA

Tuesday 8 December 2020 (9th Week, Michaelmas Term)

• 10:00 - Research Data Management (RDM), Reproducibility, and Open Science
  Laurence Brown

Thursday 4 February 2021 (3rd Week, Hilary Term)

• 13:00 - Oxford & Janssen BDI Fellowship Programme Inaugural Seminar and Round-table Discussion: The use of human genetic data to explore linkages between genetic variants, disease phenotype and the causal effects of genetic variation in human disease.
  Professor Martin Landray (Nuffield Department of Population Health), Guna Ragaopal (VP - Global Head, Computational Sciences, Discovery Sciences, Janssen Pharma)

Tuesday 23 February 2021 (6th Week, Hilary Term)

• 11:00 - Introduction to Matplotlib: data visualization with Python - Jia-Yuan Zhang
  TBA

Wednesday 17 March 2021 (9th Week, Hilary Term)

• 10:00 - Introduction to Workflow Management with Snakemake
  Dr Srinivasa Rao Rao (University of Oxford)

Wednesday 28 April 2021 (1st Week, Trinity Term)

• 11:00 - An Introduction to Text Mining in R - Dr Shelly Lachish
  TBA

Wednesday 5 May 2021 (2nd Week, Trinity Term)

• 11:00 - SIMON: open-source software for application of machine learning to biomedical data - 5 & 12 May
  Dr Adriana Tomic (Department of Paediatrics, University of Oxford)
  SIMON: open-source software for application of machine learning to biomedical data - Dr Adriana Tomic

Monday 17 May 2021 (4th Week, Trinity Term)

• 11:00 - Machine Learning in Python - 17, 18 and 19 May
  TBA

Tuesday 8 June 2021 (7th Week, Trinity Term)

• 11:00 - Introduction to Git
  TBA

Wednesday 9 June 2021 (7th Week, Trinity Term)

• 10:00 - Jupyter Notebooks: Getting started with interactive and reproducible data analysis
  Laurence Brown

Tuesday 15 June 2021 (8th Week, Trinity Term)

• 11:00 - Using Git in a small team
  TBA

Wednesday 16 June 2021 (8th Week, Trinity Term)

• 10:00 - Data visualization using Python and Jupyter Notebooks
  Laurence Brown

Tuesday 12 October 2021 (1st Week, Michaelmas Term)

• 11:00 - Workflow Description Language (WDL) running on Cromwell: An introduction
  TBA

Tuesday 23 November 2021 (7th Week, Michaelmas Term)

• 10:00 - Data visualization in Python: An Introduction to Matplotlib
  This event will take place on Microsoft Teams
  TBA

Monday 29 November 2021 (8th Week, Michaelmas Term)

• 09:00 - Software Carpentries Workshop
  We now welcome bookings from those who are able to attend all four workshops
  TBA

Wednesday 8 December 2021 (9th Week, Michaelmas Term)

• 10:00 - Plotting in ggplot2 - An Introduction
  TBA

Wednesday 21 September 2022 (-2nd Week, Michaelmas Term)

• 11:00 - Algorithm Validation for Data Science
  Professor Joachim M. Buhmann (Department of Computer Science, ETH Zurich, Switzerland)
  BDI seminars

Tuesday 7 March 2023 (8th Week, Hilary Term)

• 11:00 - Deep learning at the forefront of cardiac MR imaging
  Dr Qiang Zhang

Thursday 27 April 2023 (1st Week, Trinity Term)

• 15:30 - Coding with AI: Experiments with GPT-4
  Dr. Russ Poldrack (Stanford University)

Tuesday 16 May 2023 (4th Week, Trinity Term)

• 11:00 - Phenotyping Parkinson's Disease
  Michele Hu (University of Oxford)
• 11:50 - AI tools for diagnostics in the clinical setting - pathway to successful implementation
  Various Speakers
  BDI seminars

Tuesday 23 May 2023 (5th Week, Trinity Term)

• 09:30 - Using genomics and functional genomics to inspire advanced therapeutics in single gene disorders
  Professor Stephen Sanders (University of Oxford)

Tuesday 13 June 2023 (8th Week, Trinity Term)

• 11:00 - Alcohol phenotypes and how they are related to fMRI derived brain health measurements
  Dr Anya Topiwala (University of Oxford)

Monday 17 July 2023 (13th Week, Trinity Term)

• 13:30 - Sustainable Big Data Conversations - Tackling the hidden costs of computing: GREENER principles for sustainable computational science
  Professor Michael Inouye (University of Cambridge), Dr Loic Lannelongue (University of Cambridge)

Thursday 7 September 2023 (20th Week, Trinity Term)

• 15:00 - Selective Inference: The Silent Killer of Replicability
  Professor Yoav Benjamini (Tel Aviv University)

Tuesday 10 October 2023 (1st Week, Michaelmas Term)

• 12:00 - BDI Codemonkeys: Scaling pandas workloads with Dask
  Patrick Höfler (Coiled)
  BDI seminars

Thursday 19 October 2023 (2nd Week, Michaelmas Term)

• 09:30 - ‘Life by a Thousand Cuts’: DNA breaks drive mutagenesis in the human germline
  Dr Anjali Hinch (University of Oxford)
  BDI/CHG Genomics Seminar Series

Tuesday 7 November 2023 (5th Week, Michaelmas Term)

• 12:00 - Oxford Research Software Engineering (OxRSE)
  Dr. Martin (Robinson)

Wednesday 8 November 2023 (5th Week, Michaelmas Term)

• 14:00 - Data-driven clinical decision-support tools in labour and their implementation into maternity wards
  Dr. Antoniya Georgieva (University of Oxford)
  Digital Phenotying

Wednesday 15 November 2023 (6th Week, Michaelmas Term)

• 13:00 - BDI-IEU Joint Workshop in Health Data Science
  Various Speakers
• 16:00 - Accurate proteome-wide missense variant effect prediction with AlphaMissense
  Clare ByCroft (DeepMind)
  Machine Learning@BDI Seminar Series

Thursday 16 November 2023 (6th Week, Michaelmas Term)

• 09:30 - “De novo mutations and human disease: the role of sex, age and selfishness”
  Professor Anne Goriely (Weatherall Institute of Molecular Medicine, University of Oxford)
  BDI/CHG Genomics Seminar Series

Tuesday 21 November 2023 (7th Week, Michaelmas Term)

• 12:00 - Elevate Your Code in One Line: Boosting Python Performance with Numba
  Ao Zhang (University of Oxford)
  Code Monkeys@BDI
• 14:00 - Leadership in the Life Sciences: A conversation with Dr Marcus Schindler
  Prof Cecilia Lindgren (University of Oxford), Dr Marcus Schindler (NovoNordisk)
  BDI seminars

Wednesday 22 November 2023 (7th Week, Michaelmas Term)

• 14:00 - AI/ML & Biomedical Imaging in Disease
  Dr Bartek Papiez (University of Oxford)
  Digital Phenotying

Wednesday 29 November 2023 (8th Week, Michaelmas Term)

• 13:00 - “Machine learning for computational phenotyping and genetic discovery”
  Dr Craig Glastonbury (Human Technopole, Italy)
  Digital Phenotying

Thursday 14 December 2023 (10th Week, Michaelmas Term)

• 09:30 - “A Comprehensive genetic profile of 140,000 adults from Mexico City”
  Dr Jason Torres (University of Oxford)
  BDI/CHG Genomics Seminar Series

Thursday 18 January 2024 (1st Week, Hilary Term)

• 11:00 - Environmentally Sustainable Health Research: the Funders’ Perspective
  Dr Melissa Lewis-Brown (Cancer Research UK), Dr Susan Simon (Medical Research Council), Professor Thomas Nichols (University of Oxford), Talia Caplan (Wellcome Trust)

Tuesday 23 January 2024 (2nd Week, Hilary Term)

• 09:30 - What can large-scale metabolomic and genetic profiling of population biobanks tell us about common disease?
  Eirini Trichia (University of Oxford), Dr Luke Jostins-Dean (University of Oxford)
  BDI/CHG Genomics Seminar Series

Wednesday 31 January 2024 (3rd Week, Hilary Term)

• 14:00 - Big Data and Pain
  Various Speakers
  Digital Phenotying

Tuesday 6 February 2024 (4th Week, Hilary Term)

• 09:30 - Regulating cortical development through enhancer usage and genome topology
  Dr Emily Brookes (University of Southampton)
  BDI/CHG Genomics Seminar Series

Thursday 8 February 2024 (4th Week, Hilary Term)

• 10:30 - An introduction to Clinical Practice Research Datalink (CPRD) data
  Aden Kwok (University of Oxford), Yangmei Li (University of Oxford)

Monday 12 February 2024 (5th Week, Hilary Term)

• 15:00 - Maximizing the Potential of Whole Genome Sequencing in Psychiatry: Deep Phenotyping, Extreme Traits, and Extended Pedigrees
  Prof David Glahn (Harvard Medical School)

Monday 19 February 2024 (6th Week, Hilary Term)

• 16:00 - Integrating GWAS, omics QTLs and gene networks to reveal drug target genes
  Dr Zoltán Kutalik (University of Lausanne)
  BDI/CHG Genomics Seminar Series

Thursday 22 February 2024 (6th Week, Hilary Term)

• 10:30 - Cleaning and Manipulating CPRD Data
  Aden Kwok (University of Oxford)

Wednesday 28 February 2024 (7th Week, Hilary Term)

• 14:10 - Phenotyping beyond (national) borders: tools, processes, and examples of transportable phenotypes based on the OMOP Common Data Model
  Please note that the seminar will commence at 2:10pm.
  Prof Daniel Prieto-Alhambra (NDORMS, University of Oxford)
  Digital Phenotying

Tuesday 5 March 2024 (8th Week, Hilary Term)

• 09:30 - Unravelling the full spectrum of pathogenic variation using Saturation Genome Editing
  Dr Greg Findlay
  BDI/CHG Genomics Seminar Series

Wednesday 13 March 2024 (9th Week, Hilary Term)

• 11:00 - Medical Statistics Drop In Session
  Lei Clifton (University of Oxford)
• 14:00 - Assessing Morphology in all Dimensions: 3D Analysis of Face and Brain
  Dr Mike Suttie (University of Oxford)
  Digital Phenotying

Tuesday 19 March 2024 (10th Week, Hilary Term)

• 09:30 - The genetic basis of infertility and reproductive hormones across the allele frequency spectrum
  Please contact sumeeta.maheshwari@ndph.ox.ac.uk for Teams meeting link
  Samvida Venkatesh (University of Oxford)
  BDI/CHG Genomics Seminar Series

Wednesday 20 March 2024 (10th Week, Hilary Term)

• 10:30 - Designing an Algorithmically Enhanced NHS
  Dr Jessica Morley (Yale Digital Ethics Center)

Tuesday 16 April 2024 (0th Week, Trinity Term)

• 14:00 - “In and Out of Context: Deciphering the Genetic and Genomic Architecture of Type 2 Diabetes”
  Dr Cassandra Spracklen (University of Massachusetts)

Wednesday 17 April 2024 (0th Week, Trinity Term)

• 14:00 - "Linking smartphone, wearable and medical device data with routinely collected NHS data for the research community"
  Prof Tim Chico (University of Sheffield)
  Digital Phenotying

Tuesday 30 April 2024 (2nd Week, Trinity Term)

• 09:30 - Investigation of structural variants in clinical whole genome sequencing data leading to new genetic diagnoses
  Various Speakers
  BDI/CHG Genomics Seminar Series

Wednesday 8 May 2024 (3rd Week, Trinity Term)

• 14:00 - Prognostic significance & genetic basis of premature ventricular contractions during exercise
  Dr Stefan van Duijvenboden (University of Oxford)
  Digital Phenotying

Tuesday 14 May 2024 (4th Week, Trinity Term)

• 09:30 - The genetics of reproductive behaviour and relationship amongst 36 reproductive traits
  Prof. Melinda Mills (University of Oxford)
  BDI/CHG Genomics Seminar Series

Tuesday 28 May 2024 (6th Week, Trinity Term)

• 09:30 - Towards understanding cell types relevant for psychiatric disorders
  Prof Naomi Wray (University of Oxford)
  BDI/CHG Genomics Seminar Series

Monday 3 June 2024 (7th Week, Trinity Term)

• 14:00 - Title TBC
  Status: This talk is in preparation - details may change
  Samah Hayek (Clalit Research Institute)
  Digital Phenotying

Tuesday 11 June 2024 (8th Week, Trinity Term)

• 09:30 - Title TBC
  Status: This talk is in preparation - details may change
  Associate Professor Jemma Hopewell (University of Oxford)
  BDI/CHG Genomics Seminar Series

Tuesday 18 June 2024 (9th Week, Trinity Term)

• 09:30 - Genes & Health: a British Bangladeshi and Pakistani cohort for your research
  Status: This talk is in preparation - details may change
  Prof David A van Heel (Queen Mary University of London)
  BDI/CHG Genomics Seminar Series

Tuesday 2 July 2024 (11th Week, Trinity Term)

• 14:00 - Title TBC
  Status: This talk is in preparation - details may change
  Faisal Mahmood (Harvard Medical School)
  Digital Phenotying

Wednesday 3 July 2024 (11th Week, Trinity Term)

• 14:00 - Title TBC
  Status: This talk is in preparation - details may change
  Matthew Brown (Wellcome Trust)
  Digital Phenotying

Thursday 11 July 2024 (12th Week, Trinity Term)

• 09:30 - Title TBC
  Status: This talk is in preparation - details may change
  Prof Georgia Chenevix-Trench (QIMR Berghofer Medical Research Institute)
  BDI/CHG Genomics Seminar Series